Remittance of late fees pursuant to Sec.61 scrutiny Notice - Goods and Services Tax - GST

Facts: 1. The client is located in SEZ 2. Notice received under Sec.61 for remittance of late fees for belated filing of 3B. Notice demanded Rs.1100/- each under category of CGST and SGST. My query is: DRC-03 of SEZ GSTN only accepts IGST payments. Can I remit late fees of Rs.2200/- under IGST and inform jurisdictional Suptt? Thanks